lncRNA Paupar is needed for brain development

New research has shown how an unusual gene is needed for brain development in young mice.

Since the human genome was first sequenced in 2001, scientists have puzzled over swathes of our DNA that despite apparently lacking function are made into ribonucleic acid (RNA) by the cell. Why make RNA at all when it is not then used to make proteins, which perform fundamental biological tasks? Perhaps these so-called non-coding RNAs perform critical, but as yet unknown, tasks?

Scientists from the Universities of Bath, Oxford and Edinburgh have now identified one such non-coding RNA, called Paupar, which influences how healthy brains develop during early life. They have shown that Paupar orchestrates proteins that control neurodevelopment.

They studied KAP1, a gene that codes for an essential protein associated with several fundamental processes in neurodevelopment. The KAP1 protein acts as a regulator for several other genes which allow the brain to grow healthily and develop several types of brain cell.

Using molecular biology techniques they discovered that Paupar can act as a switch, modulating how KAP1 acts by binding to it- thus influencing the development of healthy brains in mice. It is the first time that a non-coding RNA has been shown to bind to KAP1.


The formation of an RNP complex containing a long non‐coding RNA (lncRNA), a chromatin regulator and transcription factor illustrates how a single nuclear lncRNA can regulate transcription of multiple target genes in trans.

  • The CNS‐expressed lncRNA Paupar interacts with the TRIM28/TIF1/KAP1 chromatin regulatory protein.

  • Paupar acts in trans to promote KAP1 chromatin occupancy and H3K9me3 deposition at a subset of bound target sites.

  • Paupar regulation in trans requires the formation of a ribonucleoprotein complex containing Paupar, KAP1 and non‐KRABZNF transcription factors such as PAX6.

  • Paupar and KAP1 function as regulators of olfactory bulb neurogenesis in vivo.

Dr Keith Vance, from the University of Bath Department of Biology & Biochemistry led the research. He said: “It is now clear that the genome expresses many non-coding RNAs that are not made into protein. Despite this, there is a lot of controversy regarding their function. Some groups argue that these non-coding RNAs are a result of transcriptional noise with no apparent use whilst others think that the vast majority of them must be doing something important.

“We have shown here good evidence that one of these genes, called Paupar, is important for development of the brain.

“It’s a young field, but I think it’s clear we have to reassess the central dogma of molecular biology that DNA is transcribed to RNA that codes for a protein. We’re now seeing that some RNAs can go off and do something themselves.

Pavlaki I et al. (2018). The long non‐coding RNA Paupar promotes KAP1‐dependent chromatin changes and regulates olfactory bulb neurogenesis. The EMBO Journal [Epub ahead of print]. [article]

Source – University of Bath

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